SOURCE | link/access | Type of tool/repository | Type of available data | |
---|---|---|---|---|
Elixir Core Data Resource | Ensembl | Genome browser that: annotates genes, computes multiple alignments, predicts regulatory function and collects disease data. | Vertebrates organisms data | |
free access | ||||
European Genome-phenome Archive (EGA) | Database containing all types of sequence and genotype experiments, including case-control, population, and family studies. | Human, normal and disease associated | ||
login requested | ||||
Rfam | Database of non-coding RNA families | Vertebrates organisms | ||
free access | ||||
RNAcentral | Web tool with access to a set of non-coding RNA sequences, allowing: sequence search, public Postgres database and genome browser. It enables integrated text search, sequence similarity search, bulk downloads, and programmatic data access. | Vertebrates and other organisms | ||
free access | Â | Â | ||
Tools for querying TCGA | The cancer omics atlas (TCOA) | This tool provides useful functions complementary to other existing tools, for fast and straightforward querying of TCGA | Human cancer data | |
free access | ||||
Broad Institute | Web tool to systematize analysis from TCGA, with the following functionalities: gene expression Viewer, data analysis (overview, results, methods and data), and data download. | Human cancer data | ||
Required TCGA controlled-access data | ||||
OncoLnc | Web tool analyzes TCGA in terms of survival by selecting the target genes. | Human cancer data | ||
free access to survival data (raw data not accessible) | ||||
TCGA Batch Effects Viewer | Webtool designed to to help assess, diagnose and correct for any batch effects in TCGA data. | Human cancer data | ||
cBioPortal | http://www.cbioportal.org; Open source license via GitHub | Software allowing integrative analysis of cancer genomics | Human cancer data |